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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7917975_7919029_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7917975 - 7919029
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTCCTCTGACC
Flanking Amino Acid:
PANSFVGTPYWMAPEVILAM
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65.8
0.36
1.1
60.9
44.7
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
56
0.17
1.7
69.11
36

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043988
7867014 - 7952449
85436
ENSAPLT00000013041
7867014 - 7952449
85436