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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7919122_7921014_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7919122 - 7921014
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
ACTGCCTTATCA
Flanking Amino Acid:
WSLGITCIELAERKPPLFNM
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
61.7
0.36
1.7
69.36
43.2

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013041
7867014 - 7952449
85436
ENSAPLT00000043988
7867014 - 7952449
85436