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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7922618_7928718_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7922618 - 7928718
Intron Length:
6101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTTCCTTGATT
Flanking Amino Acid:
ERPSSTDLLRHDFVRRDRPP
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
81.2
33.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.7
0.56
0.9
68.9
35.9
Minor 5ss
45
-0.5
3
58.4
46.2
Minor BPS
84.9
1.18
0.9
93.48
27.2

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043988
7867014 - 7952449
85436
ENSAPLT00000013041
7867014 - 7952449
85436