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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7928887_7931757_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7928887 - 7931757
Intron Length:
2871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
GTATCCGTAACC
Flanking Amino Acid:
PLTESQEEEEDSEHGSNLSR
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
80.8
0.69
0.8
75.5
33
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
65.3
0.46
2
76.27
39.6

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013041
7867014 - 7952449
85436