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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7956209_7956802_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7956209 - 7956802
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GCAGCCTGACTC
Flanking Amino Acid:
DAPSRKDPKFREWHHFLVTN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
74.6
0.55
1
73.6
36.9
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
44.9
-0.4
1.8
48.44
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017386
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019420
7955457 - 7957780
2324