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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7960249_7961529_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7960249 - 7961529
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TTCCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
AGATCCCTAACA
Flanking Amino Acid:
WRLALRRGAAGTEEVVFGKV
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
85.2
0.79
0.8
80.1
31.5
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
65.5
0.48
1.7
72.96
37.9

Associated Gene:

Gene:
VSIG10
Ensembl Gene ID:
ENSAPLG00000013180
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013723
7960164 - 7968205
8042