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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7962979_7964731_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7962979 - 7964731
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTCCGTAAA
5'SS Class:
weak_major
3'SS Sequence:
CTTCTTCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTGGTTTTAACA
Flanking Amino Acid:
RSPRWYMPWGYPPQSTLKCW
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.4
58.2
42.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.1
0.59
0.9
72.5
32.3
Minor 5ss
31.4
-2.1
2.8
34.2
41.4
Minor BPS
63.1
0.41
1.4
66.94
40.1

Associated Gene:

Gene:
VSIG10
Ensembl Gene ID:
ENSAPLG00000013180
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013723
7960164 - 7968205
8042