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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7965014_7965792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7965014 - 7965792
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGCCAT
U12 Branch Point Sequence:
ACTCCGCCATCC
Flanking Amino Acid:
QEEPACSVEIKLPSLESDPP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
45
-0.3
1.4
49.7
44
Major PPT
84.8
0.78
0.7
81.9
22.9
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
35.9
-1
2.4
47.29
41.7

Associated Gene:

Gene:
VSIG10
Ensembl Gene ID:
ENSAPLG00000013180
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013723
7960164 - 7968205
8042