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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7966727_7967922_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7966727 - 7967922
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAGGGGTT
5'SS Class:
major
3'SS Sequence:
CTGCCCGCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
CTCAGCCCACCT
Flanking Amino Acid:
RGRSSPPRQLGQDSGDVLVL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
77.7
33.9
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
45.6
-0.2
1.7
47.3
35.3
Minor 5ss
23
-3.1
4.6
37
47.6
Minor BPS
36.7
-0.9
2.2
53.16
47.6

Associated Gene:

Gene:
VSIG10
Ensembl Gene ID:
ENSAPLG00000013180
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013723
7960164 - 7968205
8042