Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7995947_7998404_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7995947 - 7998404

Intron Length:

2458

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAACCGCC

5'SS Class:

major

3'SS Sequence:

TGTCCCGATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

TTAATTGCAAAT

Flanking Amino Acid:

SSYLIQLPTADGGSYDVIHD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.4

0.36

1.3

56.4

44.4

Major BPS

69.2

0.48

1.3

71.9

Major PPT

68.8

0.42

62.2

38.8

Minor 5ss

43.6

-0.7

3.2

60.6

44.1

Minor BPS

42.4

-0.5

2.1

62.6

41.4

Associated Gene:

Gene:

TPCN1

Ensembl Gene ID:

ENSAPLG00000013723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039351

7994888 - 8020870

25983