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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8002585_8002755_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8002585 - 8002755
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATTT
Flanking Amino Acid:
VDCRYCGAVRRNLRQIFQSL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
85.7
0.8
0.7
83.4
24.8
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
68.1
0.65
1.8
88.32
37.1

Associated Gene:

Gene:
TPCN1
Ensembl Gene ID:
ENSAPLG00000013723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039351
7994888 - 8020870
25983
ENSAPLT00000014352
7991252 - 8020870
29619