Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8010540_8010626_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8010540 - 8010626

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTGAAT

U12 Branch Point Sequence:

GAGGCCAGAAGT

Flanking Amino Acid:

WILVETFMLQGGNFFSRNVP

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

80.7

33.7

Major BPS

53.2

0.08

1.4

63.6

40.3

Major PPT

0.74

0.9

77.3

Minor 5ss

33.7

-1.9

3.3

47.7

Minor BPS

42.5

-0.4

55.9

45.5

Associated Gene:

Gene:

TPCN1

Ensembl Gene ID:

ENSAPLG00000013723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039351

7994888 - 8020870

25983

ENSAPLT00000014352

7991252 - 8020870

29619