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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8016177_8016621_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8016177 - 8016621
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TGTCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATCTCTATCT
Flanking Amino Acid:
YFMIFYIVTMVVMTIIVAFI
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.7
0.62
0.8
69.3
36.9
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
52.9
0.17
1.9
74.49
42

Associated Gene:

Gene:
TPCN1
Ensembl Gene ID:
ENSAPLG00000013723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039351
7994888 - 8020870
25983
ENSAPLT00000014352
7991252 - 8020870
29619