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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8058591_8061523_F

Intron Information:

Intron Rank:
140836
Intron Class:
major
Intron Phase:
Intron Coordinates:
8058591 - 8061523
Intron Length:
2933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.5
0.71
0.9
77.2
37.1
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025852
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029944
8058500 - 8063084
4585