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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8073808_8075263_F

Intron Information:

Intron Rank:
127387
Intron Class:
major
Intron Phase:
Intron Coordinates:
8073808 - 8075263
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGC
5'SS Class:
major
3'SS Sequence:
GTTTGCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTACTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
64.8
42.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.4
0.68
0.9
73.8
36.9
Minor 5ss
42.6
-0.8
3.2
59.3
45.5
Minor BPS
55.8
0.26
1.6
74.5
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018702
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027845
8072623 - 8077173
4551