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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8137201_8142891_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8137201 - 8142891
Intron Length:
5691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGTAG
5'SS Class:
major
3'SS Sequence:
TTATCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTGTTTATCT
Flanking Amino Acid:
LRRKTADHFHAAVILKENAQ
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
57.8
43.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.8
0.65
0.8
73.9
30.8
Minor 5ss
42.1
-0.9
3.2
55.7
48.5
Minor BPS
58.6
0.35
2
80.3
41.9

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900