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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8143016_8148638_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8143016 - 8148638
Intron Length:
5623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
VDFLTKQDAKKAFNALCHST
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.2
0.77
0.8
78.4
34.7
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000016013
8136396 - 8198887
62492