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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8148745_8170071_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8148745 - 8170071
Intron Length:
21327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CTCTCCCTCACA
Flanking Amino Acid:
ATVREIRELFSTFGELKTVR
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69
41.8
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
78
0.63
0.7
71.8
26.4
Minor 5ss
32.4
-2
3.1
40.6
45.3
Minor BPS
52.3
0.06
2.1
67.55
44.9

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000016013
8136396 - 8198887
62492