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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8164016_8170071_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8164016 - 8170071
Intron Length:
6056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACG
5'SS Class:
strong_major
3'SS Sequence:
GTTCATCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCTTGCTCAATT
Flanking Amino Acid:
ATVREIRELFRPAPIPHFPT
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69
41.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.2
0.5
1
62.8
43.1
Minor 5ss
32.4
-2
3.1
40.6
45.3
Minor BPS
53.4
0.19
2
71.5
46

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018154
8162721 - 8187295
24575