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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8170189_8171383_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8170189 - 8171383
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
GTTGACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTGTTGACT
Flanking Amino Acid:
LEVKISERAIRPAVKSSRKK
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.5
0.51
1
64.8
41
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
60.4
0.41
2.1
84.21
36.5

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474