Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8172620_8173424_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8172620 - 8173424

Intron Length:

805

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTCTAG

5'SS Class:

major

3'SS Sequence:

ACTCTCCTCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTTAA

U12 Branch Point Sequence:

GTTCCCTTACTC

Flanking Amino Acid:

CTISKKKDKAGTLLSMGFGF

Intron Amino Acid Position:

780

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

58.8

42.7

Major BPS

65.6

0.39

0.9

55.7

32.1

Major PPT

71.5

0.48

0.8

66.1

29.3

Minor 5ss

42.2

-0.9

3.1

55.6

48.6

Minor BPS

64.6

0.44

1.6

72.67

38.4

Associated Gene:

Gene:

RBM19

Ensembl Gene ID:

ENSAPLG00000015319

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028185

8136396 - 8187295

50900

ENSAPLT00000023350

8136396 - 8187869

51474

ENSAPLT00000018154

8162721 - 8187295

24575

ENSAPLT00000016013

8136396 - 8198887

62492