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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8177600_8177842_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8177600 - 8177842
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CCAAACGCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TTTCCCCCAACC
Flanking Amino Acid:
NGVCLDAFSQAAGKRSKTVI
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
49.8
-0
1.1
42.6
37.9
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
60.2
0.3
1.9
77.82
37.4

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492