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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8177954_8178417_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8177954 - 8178417
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTCTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATGTTTCTAACT
Flanking Amino Acid:
NASKSQVLDHESKDSVAVRV
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.9
0.74
0.8
77.3
31.5
Minor 5ss
35.5
-1.6
2.8
39.4
39.7
Minor BPS
62
0.46
1.6
78.36
38.1

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492
ENSAPLT00000028185
8136396 - 8187295
50900