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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8178515_8178989_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8178515 - 8178989
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGGCTTTGAACC
Flanking Amino Acid:
KEAKEKANSASSHNWNTLFV
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.9
44.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
31.2
-2.2
3.2
40.5
45.3
Minor BPS
49.7
-0
1.4
55.52
36.3

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016013
8136396 - 8198887
62492
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575