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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8180308_8181019_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8180308 - 8181019
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTGGACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGGTTTTGGACT
Flanking Amino Acid:
RALKRKKECLDGRYVKVLRC
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
57.9
0.18
1.1
51.6
47
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
56.3
0.28
1.5
71.61
39.7

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492