About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8181092_8181823_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8181092 - 8181823
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
CTCAGCTGAACC
Flanking Amino Acid:
IGKNAQGKNTGYVFVDLKSE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
68.9
0.42
1
67.3
32.9
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
48.6
-0.1
2
59.67
45.2

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492