About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8182241_8182743_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8182241 - 8182743
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTG
5'SS Class:
major
3'SS Sequence:
TCCTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCAGC
Flanking Amino Acid:
EKKKKGSTLQKNQVSSGEAS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
65
41.4
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
79.6
32.4
Minor 5ss
46.5
-0.4
3.1
64.1
47.4
Minor BPS
53.6
0.09
2.3
75.46
41.2

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492
ENSAPLT00000028185
8136396 - 8187295
50900