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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8183013_8184071_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8183013 - 8184071
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCGAT
U12 Branch Point Sequence:
TTTTTTCTGACA
Flanking Amino Acid:
EPSEDEEETKAKKGQEKKAA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
67.5
39.2
Major BPS
65.9
0.4
1.3
64.4
42.8
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
43.2
-0.7
3
56.7
47.6
Minor BPS
63.5
0.42
1.6
78.39
31.4

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492