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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8184869_8185115_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8184869 - 8185115
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GCTTTCTAAACA
Flanking Amino Acid:
TSAAPAGAKKNKKKKDPTED
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.3
0.68
0.8
73.7
36.7
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
64.1
0.44
1.7
71.26
41.2

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474