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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8185248_8185662_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8185248 - 8185662
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TTATTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
KSFIDTSRVTVELCKSFGDP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.1
55.3
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.2
0.75
0.8
81.5
30.2
Minor 5ss
40.7
-1
3.1
56.3
47.9
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575
ENSAPLT00000016013
8136396 - 8198887
62492