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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8185846_8186989_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8185846 - 8186989
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
CGTCGTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGTTGCTGACCT
Flanking Amino Acid:
RLIVKNLPNGMKEDRFRKLF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
73.5
0.53
0.9
64.4
41.4
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
51.7
0.13
2.2
77.65
44.4

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028185
8136396 - 8187295
50900
ENSAPLT00000023350
8136396 - 8187869
51474
ENSAPLT00000018154
8162721 - 8187295
24575