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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8185846_8188664_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8185846 - 8188664
Intron Length:
2819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTCGTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGTTGCTGACCT
Flanking Amino Acid:
ISDAPEVKDLMKEDRFRKLF
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
73.5
0.53
0.9
64.4
41.4
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
51.7
0.13
2.2
77.65
44.4

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016013
8136396 - 8198887
62492