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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8188800_8198763_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8188800 - 8198763
Intron Length:
9964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAAAC
U12 Branch Point Sequence:
TTTTTTTTGCCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
55
0.13
1
62.6
30.8
Major PPT
76
0.58
0.8
73.5
31.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
47.5
-0.2
3.4
76.51
34.1

Associated Gene:

Gene:
RBM19
Ensembl Gene ID:
ENSAPLG00000015319
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016013
8136396 - 8198887
62492