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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8245042_8245124_R

Intron Information:

Intron Rank:
145886
Intron Class:
major
Intron Phase:
Intron Coordinates:
8245042 - 8245124
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGCTATTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
68.9
0.42
0.9
66.1
40.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
54.2
0.21
1.6
70.4
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025876
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041637
8244766 - 8246854
2089