About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8245213_8246351_R

Intron Information:

Intron Rank:
145887
Intron Class:
major
Intron Phase:
Intron Coordinates:
8245213 - 8246351
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.8
0.94
0.6
87.1
23.5
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025876
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041637
8244766 - 8246854
2089