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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_82552_85155_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82552 - 85155
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTGTTTTAATA
Flanking Amino Acid:
DNDKIALYAAREGKEEILKV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.8
83.9
31.1
Minor 5ss
31.3
-2.1
2.7
33.6
35.4
Minor BPS
65.8
0.49
1.3
70.9
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018082
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021944
74477 - 95464
20988