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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8259084_8260045_R

Intron Information:

Intron Rank:
128963
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8259084 - 8260045
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCCAA
5'SS Class:
major
3'SS Sequence:
TAATTTGAACTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
63
38.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
58.7
0.2
1.1
52.8
45.7
Minor 5ss
31.8
-2.1
3
38.5
46.5
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016527
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031355
8258046 - 8260656
2611