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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8260166_8260597_R

Intron Information:

Intron Rank:
128964
Intron Class:
major
Intron Phase:
Intron Coordinates:
8260166 - 8260597
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GTTTACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
76
0.58
1
66.2
44.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
72.8
0.79
1.6
87.73
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016527
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031355
8258046 - 8260656
2611