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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8261485_8264320_R

Intron Information:

Intron Rank:
155484
Intron Class:
major
Intron Phase:
Intron Coordinates:
8261485 - 8264320
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031150
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038504
8261290 - 8264691
3402
ENSAPLT00000037256
8261290 - 8265412
4123