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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8326132_8417531_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8326132 - 8417531
Intron Length:
91400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CGTCTCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
73.8
0.54
1
66.3
40.8
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
59.4
0.37
1.7
73.71
43

Associated Gene:

Gene:
TBX5
Ensembl Gene ID:
ENSAPLG00000006488
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032077
8292141 - 8417622
125482