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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8421618_8422020_F

Intron Information:

Intron Rank:
123543
Intron Class:
major
Intron Phase:
Intron Coordinates:
8421618 - 8422020
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
100
1.24
0.5
100
0
Major PPT
82.2
0.72
0.8
80.5
31.5
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
58.4
0.34
1.5
71.47
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016621
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044582
8420723 - 8422155
1433