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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_85270_92580_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85270 - 92580
Intron Length:
7311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CCATCTTTAACC
Flanking Amino Acid:
MGVKVGDRVVGYLPNSIHAV
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
69
0.43
1
61.8
39.1
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
72.5
0.68
1.3
70.6
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018082
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021944
74477 - 95464
20988