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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_856542_914560_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
856542 - 914560
Intron Length:
58019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
CTGTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTACAACT
Flanking Amino Acid:
TNSTVDQFILRAKVKKGVNI
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.4
0.55
0.9
70.1
35.3
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
53.7
0.2
1.8
76.41
40.5

Associated Gene:

Gene:
TMEM132C
Ensembl Gene ID:
ENSAPLG00000011520
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012003
853775 - 1011790
158016