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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8665782_8767251_R

Intron Information:

Intron Rank:
151701
Intron Class:
major
Intron Phase:
Intron Coordinates:
8665782 - 8767251
Intron Length:
101470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGCGTAGT
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATACTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.1
61.9
44.2
Major BPS
100
1.24
0.5
100
0
Major PPT
73.8
0.54
0.7
65.3
30.6
Minor 5ss
32.9
-1.9
3.1
42.4
44.5
Minor BPS
58.9
0.36
1.5
72.82
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029167
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042265
8613766 - 8767308
153543