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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8926093_8927298_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8926093 - 8927298
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTCTGCATT
Flanking Amino Acid:
LDSKTTSDVLRFVLEQYNAL
Intron Amino Acid Position:
2147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
52.7
0.17
1.9
77.82
38.8

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008475
8925960 - 9113868
187909
ENSAPLT00000038994
8924916 - 9113868
188953
ENSAPLT00000034575
8924916 - 9119342
194427