Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8927412_8929554_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8927412 - 8929554

Intron Length:

2143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGTCTT

5'SS Class:

major

3'SS Sequence:

TTTGCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TTTGCTTTCACA

Flanking Amino Acid:

AQNQCPLFLKASLHHHISVA

Intron Amino Acid Position:

2110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.3

74.4

41.9

Major BPS

73.9

0.59

30.2

Major PPT

84.6

0.78

0.8

79.7

32.4

Minor 5ss

41.7

-0.9

2.9

59.1

45.3

Minor BPS

0.46

1.8

78.6

38.6

Associated Gene:

Gene:

MED13L

Ensembl Gene ID:

ENSAPLG00000008117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038994

8924916 - 9113868

188953

ENSAPLT00000034575

8924916 - 9119342

194427

ENSAPLT00000008475

8925960 - 9113868

187909