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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8932988_8935235_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8932988 - 8935235
Intron Length:
2248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
PNEDGFSPTNDDMFDLPFPD
Intron Amino Acid Position:
2004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.5
0.82
0.7
84.6
30
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909
ENSAPLT00000038994
8924916 - 9113868
188953