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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8935413_8936483_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8935413 - 8936483
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTGGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCAAATTAATG
Flanking Amino Acid:
EPQGSFVVMPDAVTMGSVFG
Intron Amino Acid Position:
1945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
64.6
0.33
1.2
67.6
38.1
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
46.8
-0.3
1.9
51.3
42.7

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038994
8924916 - 9113868
188953
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909