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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8944821_8946280_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8944821 - 8946280
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TGCATGTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTGAATTTAACA
Flanking Amino Acid:
IPQQQQEGQEGVTERERIGI
Intron Amino Acid Position:
1633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71.7
0.49
1
61.6
44.4
Minor 5ss
34.1
-1.8
2.9
36.5
40.5
Minor BPS
64.7
0.46
1.5
73.03
38.7

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008475
8925960 - 9113868
187909
ENSAPLT00000038994
8924916 - 9113868
188953
ENSAPLT00000034575
8924916 - 9119342
194427