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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8952497_8954941_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8952497 - 8954941
Intron Length:
2445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ACACTCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACAC
Flanking Amino Acid:
PAAPFIRDGYNNVPSVGSLA
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
69.1
0.43
0.9
62.6
33.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
53.5
0.09
1.9
71.5
39.6

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038994
8924916 - 9113868
188953
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909